Scammed transaction went into a hacked account

Yesterday I purchased an item and was informed by eBay that due to concerns the item was removed from the site. I contacted an employee through live chat and was told that the amount paid would be refunded in full. I paid with my debit card and when I checked my online banking the transaction was no longer pending and had entered the paypal linked with the sellers hacked account. Seeing as the money is no longer pending I am unsure as to whether there is anything eBay can do to refund me my money?

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I think that as usual you were misinformed. I doubt very much that you will get a refund unless you deal with it yourself. If the item is not showing in your purchases, you will need to open a Paypal Not Received Case and Escalate after 2 days but by day day 20 to get a refund. If showing in your purchases open an Ebay Not Received Case to get a refund.